Variant report

Variant	rs144503481
Chromosome Location	chr13:50513182-50513183
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr13:50513076-50513329	HepG2	liver:	n/a	chr13:50513236-50513251 chr13:50513237-50513250 chr13:50513238-50513250 chr13:50513235-50513253 chr13:50513238-50513250 chr13:50513236-50513251 chr13:50513236-50513251 chr13:50513236-50513251 chr13:50513236-50513251 chr13:50513237-50513251 chr13:50513233-50513255 chr13:50513238-50513251 chr13:50513236-50513251
2	HNF4A	chr13:50513089-50513325	HepG2	liver:	n/a	chr13:50513236-50513251 chr13:50513237-50513250 chr13:50513238-50513250 chr13:50513235-50513253 chr13:50513238-50513250 chr13:50513236-50513251 chr13:50513236-50513251 chr13:50513236-50513251 chr13:50513236-50513251 chr13:50513237-50513251 chr13:50513233-50513255 chr13:50513238-50513251 chr13:50513236-50513251
3	HNF4G	chr13:50513058-50513357	HepG2	liver:	n/a	chr13:50513236-50513251 chr13:50513237-50513250 chr13:50513238-50513250 chr13:50513237-50513252 chr13:50513235-50513253 chr13:50513238-50513250 chr13:50513236-50513251 chr13:50513236-50513251 chr13:50513236-50513251 chr13:50513237-50513251 chr13:50513233-50513255 chr13:50513238-50513251 chr13:50513236-50513251

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM13-7	chr13:50510782-50513292	NONHSAT033768
2	lnc-TRIM13-7	chr13:50511944-50513226	NONHSAT033769

Variant related genes	Relation type
SPRYD7	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836423	chr13:50509784-50514706	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1836704	chr13:50509784-50514706	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1838605	chr13:50509784-50514706	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv1834429	chr13:50509784-50536186	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2645198	chr13:50512407-50515030	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2511327	chr13:50512530-50515645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3518107	chr13:50512790-50515230	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv820932	chr13:50512955-50515499	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2393598	chr13:50512991-50515044	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3518096	chr13:50512992-50515056	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3518118	chr13:50512992-50515056	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv826638	chr13:50513047-50514921	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv819405	chr13:50513076-50515389	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv16859	chr13:50513125-50515315	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv561619	chr13:50513148-50513718	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv561620	chr13:50513148-50513964	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv561621	chr13:50513148-50514120	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1838304	chr13:50513148-50514174	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv1841113	chr13:50513148-50514174	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1842692	chr13:50513148-50514174	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv561622	chr13:50513148-50514174	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv1835622	chr13:50513148-50514281	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv1840376	chr13:50513148-50514281	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv561623	chr13:50513148-50514281	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv561624	chr13:50513148-50514559	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv1834261	chr13:50513148-50514706	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	esv1834394	chr13:50513148-50514706	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	esv1835099	chr13:50513148-50514706	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	esv1836798	chr13:50513148-50514706	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	esv1836911	chr13:50513148-50514706	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
31	esv1836935	chr13:50513148-50514706	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
32	esv1837606	chr13:50513148-50514706	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
33	esv1839128	chr13:50513148-50514706	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
34	esv1839375	chr13:50513148-50514706	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
35	esv1842240	chr13:50513148-50514706	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
36	nsv561625	chr13:50513148-50514706	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
37	nsv561626	chr13:50513148-50518728	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
38	esv1837591	chr13:50513148-50530603	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50511400-50537800	Weak transcription	Left Ventricle	heart
2	chr13:50511600-50513400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:50511600-50513400	Enhancers	Brain Anterior Caudate	brain
4	chr13:50511600-50513800	Enhancers	HepG2	liver
5	chr13:50511600-50514600	Enhancers	Fetal Intestine Large	intestine
6	chr13:50511600-50517800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr13:50511800-50513200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr13:50511800-50513400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr13:50511800-50514200	Enhancers	Fetal Intestine Small	intestine
10	chr13:50512200-50513200	Weak transcription	Fetal Heart	heart
11	chr13:50512200-50514000	Enhancers	Adipose Nuclei	Adipose
12	chr13:50512600-50513400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:50512600-50513400	Enhancers	Esophagus	oesophagus
14	chr13:50512600-50513400	Enhancers	Ovary	ovary
15	chr13:50512600-50514200	Enhancers	Fetal Lung	lung
16	chr13:50512600-50514400	Weak transcription	HSMMtube	muscle
17	chr13:50512600-50515600	Weak transcription	Stomach Mucosa	stomach
18	chr13:50512800-50513600	Enhancers	Duodenum Mucosa	Duodenum
19	chr13:50512800-50513800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr13:50512800-50513800	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr13:50512800-50513800	Enhancers	NHLF	lung
22	chr13:50513000-50513400	Flanking Active TSS	Liver	Liver
23	chr13:50513000-50513400	Enhancers	Brain Germinal Matrix	brain
24	chr13:50513000-50513400	Enhancers	Fetal Muscle Leg	muscle
25	chr13:50513000-50513400	Active TSS	Rectal Mucosa Donor 31	rectum
26	chr13:50513000-50513800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:50513000-50513800	Enhancers	Fetal Kidney	kidney
28	chr13:50513000-50514200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links