Variant report

Variant	rs1445157
Chromosome Location	chr10:49690351-49690352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:49690130-49690749	K562	blood:	n/a	n/a
2	JUND	chr10:49690288-49690584	K562	blood:	n/a	n/a
3	CUX1	chr10:49689748-49690662	K562	blood:	n/a	n/a
4	TAL1	chr10:49690237-49690578	K562	blood:	n/a	n/a
5	MYC	chr10:49690232-49690622	K562	blood:	n/a	n/a
6	IRF1	chr10:49689893-49690608	K562	blood:	n/a	n/a
7	TBL1XR1	chr10:49690221-49690706	K562	blood:	n/a	n/a
8	POLR2A	chr10:49689913-49690429	U87	brain:	n/a	n/a
9	ZNF143	chr10:49690333-49690574	K562	blood:	n/a	n/a
10	MYC	chr10:49690075-49690547	K562	blood:	n/a	n/a
11	EP300	chr10:49689937-49690641	K562	blood:	n/a	n/a
12	IRF1	chr10:49690188-49690764	K562	blood:	n/a	n/a
13	TEAD4	chr10:49690129-49690707	K562	blood:	n/a	n/a
14	POLR2A	chr10:49689862-49690429	U87	brain:	n/a	n/a

Variant related genes	Relation type
ARHGAP22	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10776605	1.00[MEX][hapmap]
rs10857581	1.00[ASW][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs1373787	0.83[AMR][1000 genomes]
rs1445156	0.83[AMR][1000 genomes]
rs1814472	0.83[AMR][1000 genomes]
rs1822858	0.83[AMR][1000 genomes]
rs1822859	0.83[AMR][1000 genomes]
rs1867575	1.00[MEX][hapmap]
rs2120903	1.00[AMR][1000 genomes]
rs3867450	1.00[MEX][hapmap]
rs3867452	0.83[AMR][1000 genomes]
rs3954045	0.83[AMR][1000 genomes]
rs4644607	0.83[AMR][1000 genomes]
rs4838409	0.83[AMR][1000 genomes]
rs4838411	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs4838603	1.00[MEX][hapmap]
rs7081715	0.83[AMR][1000 genomes]
rs7085609	0.83[AMR][1000 genomes]
rs7091343	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49679200-49690400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:49679800-49704200	Weak transcription	NH-A	brain
3	chr10:49679800-49704200	Weak transcription	NHDF-Ad	bronchial
4	chr10:49684800-49690600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:49684800-49693000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:49685600-49701000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:49685800-49692000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:49685800-49692600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:49685800-49694800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:49685800-49704800	Weak transcription	HUVEC	blood vessel
11	chr10:49687000-49704400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:49687400-49694800	Weak transcription	HSMM	muscle
13	chr10:49687600-49703800	Weak transcription	HSMMtube	muscle
14	chr10:49687800-49699200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:49688600-49690800	Flanking Active TSS	K562	blood
16	chr10:49688600-49693800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:49688800-49699400	Weak transcription	Osteobl	bone
18	chr10:49689000-49690400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:49689200-49698200	Weak transcription	NHLF	lung
20	chr10:49689200-49701400	Weak transcription	Right Atrium	heart
21	chr10:49689400-49690600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:49689400-49691000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:49689400-49692800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:49689400-49694400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:49689400-49695400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:49689400-49699000	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:49689400-49701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:49689600-49692200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:49689600-49695200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:49690200-49691200	Weak transcription	Primary hematopoietic stem cells	blood

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