Variant report

Variant	rs4838411
Chromosome Location	chr10:49700169-49700170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49698967..49701120-chr10:49704411..49706305,2	K562	blood:
2	chr10:49698395..49701025-chr10:49710345..49712604,2	K562	blood:
3	chr10:49698265..49700401-chr10:49714707..49717015,2	K562	blood:
4	chr10:49698335..49701028-chr10:49818067..49819689,2	K562	blood:
5	chr10:49692019..49695584-chr10:49695676..49700242,5	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10776605	1.00[MEX][hapmap]
rs10857581	1.00[MEX][hapmap]
rs1445157	0.83[AMR][1000 genomes]
rs1867575	1.00[MEX][hapmap]
rs2120903	0.83[AMR][1000 genomes]
rs3867450	1.00[MEX][hapmap]
rs4838603	1.00[MEX][hapmap]
rs7091343	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4838411	ARHGAP22	cis	lymphoblastoid	seeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49679800-49704200	Weak transcription	NH-A	brain
2	chr10:49679800-49704200	Weak transcription	NHDF-Ad	bronchial
3	chr10:49685600-49701000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:49685800-49704800	Weak transcription	HUVEC	blood vessel
5	chr10:49687000-49704400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:49687600-49703800	Weak transcription	HSMMtube	muscle
7	chr10:49689200-49701400	Weak transcription	Right Atrium	heart
8	chr10:49689400-49701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:49693000-49701800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:49696800-49702600	Weak transcription	HSMM	muscle
11	chr10:49697200-49700600	Weak transcription	K562	blood
12	chr10:49698000-49731200	Weak transcription	Aorta	Aorta
13	chr10:49698200-49702600	Enhancers	Brain Substantia Nigra	brain
14	chr10:49698400-49703800	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:49698600-49700600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:49698800-49701000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:49699000-49700200	Enhancers	Brain Hippocampus Middle	brain
18	chr10:49699000-49702200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:49699200-49702400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:49699200-49705200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:49699200-49706000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:49699200-49706400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:49699400-49700200	Enhancers	Brain Cingulate Gyrus	brain
24	chr10:49699400-49701200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:49699400-49702000	Strong transcription	Osteobl	bone
26	chr10:49699400-49705200	Weak transcription	Brain Anterior Caudate	brain
27	chr10:49699800-49700800	Weak transcription	NHLF	lung
28	chr10:49699800-49704800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:49700000-49701200	Weak transcription	Brain Angular Gyrus	brain

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