Variant report

Variant	rs1445246
Chromosome Location	chr13:94181363-94181364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:94173270..94175976-chr13:94179967..94182735,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1318869	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1445247	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16948911	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16948925	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16948958	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590508	1.00[AMR][1000 genomes]
rs2590513	1.00[AMR][1000 genomes]
rs2590516	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590519	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590521	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590522	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590524	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590525	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590526	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590527	0.84[AFR][1000 genomes]
rs2590528	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590530	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590533	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590534	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590535	0.85[AFR][1000 genomes]
rs2590537	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590538	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590539	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590540	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590541	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590542	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813589	1.00[AMR][1000 genomes]
rs2813598	0.87[AFR][1000 genomes]
rs2813599	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813600	0.86[AFR][1000 genomes]
rs2813601	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813602	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813603	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813604	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813605	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813607	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3908638	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6492666	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7320003	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7322180	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7322574	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7326344	1.00[AMR][1000 genomes]
rs7328826	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7329040	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7329041	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7333593	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7338822	0.86[AFR][1000 genomes]
rs74108582	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74108584	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74108585	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7981908	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7982284	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7993697	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs975827	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs976419	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs976420	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs976421	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv562749	chr13:94083352-94263206	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv900922	chr13:94105666-94281492	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv2758340	chr13:94174654-94348179	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv2759958	chr13:94174654-94348179	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94176800-94183600	Weak transcription	Ovary	ovary
2	chr13:94177600-94184400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:94177600-94188000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:94177800-94184800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:94179000-94182400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:94179400-94182000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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