Variant report

Variant	rs1445574
Chromosome Location	chr1:67051290-67051291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10127489	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10127497	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10127994	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10128053	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11208911	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11208912	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11208913	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12057164	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12066541	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12069946	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12070270	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12072937	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12074963	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12085282	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12091471	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12091475	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1348674	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1530490	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1530491	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17129100	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17129101	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17129226	0.82[EUR][1000 genomes]
rs1832417	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1988415	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs20354	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2121042	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2166307	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2166308	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3901541	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41405244	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41511845	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57572851	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58064608	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58171402	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58274265	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6588210	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6588211	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6588212	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66552897	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6664698	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6689138	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6689183	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6689333	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6696366	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67915022	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669451	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72670251	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72676189	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72676194	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72676196	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72676198	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72679015	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7520353	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7528240	0.82[EUR][1000 genomes]
rs7531750	0.82[EUR][1000 genomes]
rs7532442	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs920986	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013351	chr1:67039730-67055937	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003016	chr1:67043120-67067119	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1013476	chr1:67044630-67065911	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67041600-67062400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:67043200-67052000	Weak transcription	Brain Angular Gyrus	brain
3	chr1:67043200-67056800	Weak transcription	Brain Anterior Caudate	brain
4	chr1:67043200-67064400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:67043400-67056200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:67043600-67066600	Weak transcription	Fetal Brain Male	brain
7	chr1:67044000-67057200	Weak transcription	Aorta	Aorta
8	chr1:67044200-67064000	Weak transcription	NH-A	brain
9	chr1:67044800-67064000	Weak transcription	Osteobl	bone
10	chr1:67045600-67056000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:67046400-67060400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:67049600-67062600	Weak transcription	Psoas Muscle	Psoas
13	chr1:67050200-67052200	Enhancers	Fetal Heart	heart
14	chr1:67051000-67051600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:67051000-67056200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:67051000-67060400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:67051000-67061600	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:67051000-67064200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:67051000-67064400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:67051000-67065000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:67051200-67055200	Weak transcription	HepG2	liver
22	chr1:67051200-67056200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:67051200-67056400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:67051200-67059000	Weak transcription	NHLF	lung
25	chr1:67051200-67063200	Weak transcription	NHDF-Ad	bronchial
26	chr1:67051200-67064200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:67051200-67064400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:67051200-67064400	Weak transcription	Brain Substantia Nigra	brain
29	chr1:67051200-67066200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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