Variant report

Variant	rs6588210
Chromosome Location	chr1:67084419-67084420
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10127489	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10127497	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10127994	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10128053	0.94[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs10159265	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10749764	0.80[JPT][hapmap]
rs11208911	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11208912	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11208913	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11208922	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11208940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11208952	0.88[CEU][hapmap]
rs11208953	0.82[CEU][hapmap]
rs12057164	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12062570	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12066541	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12069946	0.94[CEU][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12070270	0.94[CEU][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12072937	0.94[CEU][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12074963	0.94[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12085282	0.94[CEU][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes]
rs12091471	0.94[CEU][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12091475	0.94[CEU][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12094526	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs13376692	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1348674	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1445574	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1530490	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1530491	0.94[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17129100	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17129101	0.94[CEU][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17129226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17129244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17129245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17129252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs17129269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17129307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17440390	1.00[CEU][hapmap]
rs1832417	0.94[CEU][hapmap];0.91[GIH][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1988415	1.00[ASW][hapmap];0.94[CEU][hapmap];0.91[GIH][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs20354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121042	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2166307	0.94[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2166308	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2182110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs3901541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41405244	0.94[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41418445	0.94[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap]
rs41511845	0.94[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4655639	1.00[ASN][1000 genomes]
rs4655642	0.89[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs5008753	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs55817355	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55895340	0.91[EUR][1000 genomes]
rs57572851	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58064608	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58171402	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58274265	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58418199	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61313508	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6588211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6588212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66552897	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6664698	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6670827	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6689138	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6689183	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6689333	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6690186	0.83[CEU][hapmap];0.91[TSI][hapmap]
rs6694782	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs6696366	0.92[EUR][1000 genomes]
rs67915022	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669451	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72669463	0.91[EUR][1000 genomes]
rs72669465	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72670251	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72676189	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72676194	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72676196	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72676198	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72679015	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74085003	0.89[EUR][1000 genomes]
rs74087510	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7520353	0.94[CEU][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes]
rs7525761	0.80[CEU][hapmap]
rs7528240	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7531750	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7532442	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7536634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7538967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs7540244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap]
rs7543378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7545674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs920986	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9787219	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:67066400-67089600	Weak transcription	Brain Angular Gyrus	brain
3	chr1:67071600-67094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:67078000-67088400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:67081400-67084800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:67082000-67089400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:67082600-67085000	Enhancers	NHDF-Ad	bronchial
8	chr1:67082800-67084800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:67083800-67084600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:67083800-67085200	Weak transcription	Right Ventricle	heart
11	chr1:67084200-67085400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:67084200-67099800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:67084400-67084600	Enhancers	NHLF	lung

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