Variant report

Variant	rs11208940
Chromosome Location	chr1:67127242-67127243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10128053	0.90[JPT][hapmap]
rs10749764	0.96[CEU][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10789212	0.82[YRI][hapmap]
rs10789213	0.80[AFR][1000 genomes]
rs10889636	0.80[YRI][hapmap]
rs10889640	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs11208922	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs11208927	0.85[YRI][hapmap]
rs12062570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12069946	0.90[JPT][hapmap]
rs12070270	0.90[JPT][hapmap]
rs12072937	0.90[JPT][hapmap]
rs12074963	0.90[JPT][hapmap]
rs12085282	0.89[JPT][hapmap]
rs12091471	0.90[JPT][hapmap]
rs12091475	0.90[JPT][hapmap]
rs12094526	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13376692	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs1530491	0.90[JPT][hapmap]
rs17129101	0.90[JPT][hapmap]
rs17129226	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17129244	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17129245	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17129252	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17129269	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17129307	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs20354	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2166307	0.90[JPT][hapmap]
rs2182110	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3901541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs41405244	0.90[JPT][hapmap]
rs41418445	0.90[JPT][hapmap]
rs41511845	0.90[JPT][hapmap]
rs4655642	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs5008753	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6588210	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6588211	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6588212	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6588213	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6664403	0.87[ASN][1000 genomes]
rs6664597	0.87[ASN][1000 genomes]
rs6664698	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6670827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6694782	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72669469	0.98[ASN][1000 genomes]
rs72669472	1.00[ASN][1000 genomes]
rs72669475	1.00[ASN][1000 genomes]
rs72669488	0.91[ASN][1000 genomes]
rs7520353	0.90[JPT][hapmap]
rs7536188	0.80[YRI][hapmap]
rs7536634	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7538967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7540244	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs7543378	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7545674	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7549727	0.91[ASN][1000 genomes]
rs920986	1.00[JPT][hapmap]
rs9787219	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv947265	chr1:67123990-67128598	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67090400-67155000	Weak transcription	Fetal Heart	heart
2	chr1:67091200-67128000	Weak transcription	NH-A	brain
3	chr1:67100000-67144400	Weak transcription	Left Ventricle	heart
4	chr1:67106200-67143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:67108000-67136200	Weak transcription	Fetal Brain Female	brain
6	chr1:67109200-67141800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:67109600-67134200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:67109600-67155000	Weak transcription	Brain Anterior Caudate	brain
9	chr1:67110800-67134400	Weak transcription	Brain Substantia Nigra	brain
10	chr1:67111000-67135200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:67111400-67154800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:67114200-67134200	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:67114200-67142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:67114200-67156400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:67114600-67142200	Weak transcription	NHLF	lung
16	chr1:67118800-67138800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:67118800-67140400	Weak transcription	Aorta	Aorta
18	chr1:67121200-67145400	Weak transcription	Brain Angular Gyrus	brain
19	chr1:67122000-67130000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:67122000-67141200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:67122400-67132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:67123200-67128600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:67126600-67134800	Weak transcription	Fetal Kidney	kidney

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