Variant report

Variant	rs7536188
Chromosome Location	chr1:67087926-67087927
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10127496	0.90[ASN][1000 genomes]
rs10789211	0.83[ASW][hapmap];0.84[CHD][hapmap]
rs10789212	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap]
rs10889636	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10889637	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889640	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap]
rs11208914	1.00[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11208927	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11208940	0.80[YRI][hapmap]
rs12027701	0.81[JPT][hapmap]
rs1445573	0.82[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1867631	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4655630	0.82[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4655634	0.84[ASN][1000 genomes]
rs6588209	0.84[CHD][hapmap]
rs6665859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6670827	0.80[YRI][hapmap]
rs6694782	0.83[ASW][hapmap];0.80[YRI][hapmap]
rs7515444	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7520226	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7526812	0.83[ASW][hapmap]
rs7546090	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551301	0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7536188	UBE2U	cis	cerebellum	SCAN
rs7536188	SGIP1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:67066400-67089600	Weak transcription	Brain Angular Gyrus	brain
3	chr1:67071600-67094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:67078000-67088400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:67082000-67089400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:67084200-67099800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:67084600-67089400	Weak transcription	NHLF	lung
8	chr1:67084800-67089200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:67085000-67088800	Weak transcription	NHDF-Ad	bronchial
10	chr1:67085600-67089400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:67086400-67089600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:67086600-67089400	Weak transcription	Brain Substantia Nigra	brain
13	chr1:67087600-67090400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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