Variant report

Variant	rs6665859
Chromosome Location	chr1:67077555-67077556
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10127496	0.90[ASN][1000 genomes]
rs10789212	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10889636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10889637	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889640	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs11208914	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11208927	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1445573	0.82[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1867631	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4655630	0.82[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4655634	0.84[ASN][1000 genomes]
rs7515444	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7520226	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7546090	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:67065800-67078800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:67065800-67082800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:67066200-67083800	Weak transcription	NHLF	lung
5	chr1:67066400-67089600	Weak transcription	Brain Angular Gyrus	brain
6	chr1:67066600-67077800	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:67068000-67082600	Weak transcription	NHDF-Ad	bronchial
8	chr1:67071600-67094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:67073200-67079000	Weak transcription	Aorta	Aorta
10	chr1:67074000-67081200	Weak transcription	Brain Anterior Caudate	brain
11	chr1:67074600-67078000	Weak transcription	Brain Substantia Nigra	brain
12	chr1:67075400-67077600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:67075400-67079400	Weak transcription	Fetal Heart	heart
14	chr1:67077000-67077800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:67077000-67078200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:67077200-67078000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:67077400-67078000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:67077400-67078200	Enhancers	Fetal Lung	lung
19	chr1:67077400-67081000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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