Variant report

Variant	rs74087510
Chromosome Location	chr1:67108867-67108868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10127489	0.86[EUR][1000 genomes]
rs10127497	0.86[EUR][1000 genomes]
rs10127994	0.86[EUR][1000 genomes]
rs10128053	0.86[EUR][1000 genomes]
rs10159265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208911	0.85[EUR][1000 genomes]
rs11208912	0.85[EUR][1000 genomes]
rs11208913	0.86[EUR][1000 genomes]
rs12057164	0.86[EUR][1000 genomes]
rs12066541	0.86[EUR][1000 genomes]
rs12069946	0.86[EUR][1000 genomes]
rs12070270	0.86[EUR][1000 genomes]
rs12072937	0.86[EUR][1000 genomes]
rs12074963	0.86[EUR][1000 genomes]
rs12085282	0.86[EUR][1000 genomes]
rs12091471	0.86[EUR][1000 genomes]
rs12091475	0.86[EUR][1000 genomes]
rs13376692	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348674	0.86[EUR][1000 genomes]
rs1530490	0.86[EUR][1000 genomes]
rs1530491	0.86[EUR][1000 genomes]
rs17129100	0.84[EUR][1000 genomes]
rs17129101	0.84[EUR][1000 genomes]
rs17129226	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17129244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129252	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129269	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129307	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1832417	0.83[EUR][1000 genomes]
rs1988415	0.83[EUR][1000 genomes]
rs20354	0.91[EUR][1000 genomes]
rs2121042	0.86[EUR][1000 genomes]
rs2166307	0.86[EUR][1000 genomes]
rs2166308	0.85[EUR][1000 genomes]
rs2182110	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3901541	0.91[EUR][1000 genomes]
rs41405244	0.86[EUR][1000 genomes]
rs41511845	0.86[EUR][1000 genomes]
rs55817355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55895340	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57572851	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58064608	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58171402	0.86[EUR][1000 genomes]
rs58274265	0.86[EUR][1000 genomes]
rs58418199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61313508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588210	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6588211	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6588212	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6588213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66552897	0.85[EUR][1000 genomes]
rs6664698	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6689138	0.86[EUR][1000 genomes]
rs6689183	0.86[EUR][1000 genomes]
rs6689333	0.86[EUR][1000 genomes]
rs6696366	0.86[EUR][1000 genomes]
rs67915022	0.86[EUR][1000 genomes]
rs72669451	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72669463	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669465	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669469	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72669472	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72669475	0.82[EUR][1000 genomes]
rs72670251	0.84[EUR][1000 genomes]
rs72676189	0.84[EUR][1000 genomes]
rs72676194	0.86[EUR][1000 genomes]
rs72676196	0.86[EUR][1000 genomes]
rs72679015	0.91[EUR][1000 genomes]
rs74085003	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520353	0.86[EUR][1000 genomes]
rs7528240	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7531750	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7532442	0.86[EUR][1000 genomes]
rs7536634	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7538967	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540244	0.82[EUR][1000 genomes]
rs7543378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7545674	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549727	0.80[EUR][1000 genomes]
rs920986	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67088400-67114200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:67090400-67155000	Weak transcription	Fetal Heart	heart
3	chr1:67091200-67128000	Weak transcription	NH-A	brain
4	chr1:67092000-67117200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:67092200-67114200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:67099400-67115600	Weak transcription	Fetal Lung	lung
7	chr1:67100000-67144400	Weak transcription	Left Ventricle	heart
8	chr1:67101200-67113600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:67101400-67110200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:67101600-67110800	Weak transcription	Aorta	Aorta
11	chr1:67102800-67120200	Weak transcription	Brain Germinal Matrix	brain
12	chr1:67103200-67112200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:67106200-67143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:67106800-67115800	Weak transcription	Fetal Brain Male	brain
15	chr1:67107200-67112800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr1:67107200-67114200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:67107400-67109200	Enhancers	NHDF-Ad	bronchial
18	chr1:67107800-67109000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:67107800-67109600	Strong transcription	NHLF	lung
20	chr1:67108000-67136200	Weak transcription	Fetal Brain Female	brain
21	chr1:67108200-67109000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr1:67108200-67110200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:67108400-67109600	Enhancers	Brain Anterior Caudate	brain
24	chr1:67108400-67110800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:67108600-67109000	Enhancers	Osteobl	bone
26	chr1:67108600-67110400	Enhancers	Brain Hippocampus Middle	brain
27	chr1:67108600-67110800	Enhancers	Brain Substantia Nigra	brain
28	chr1:67108600-67111000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr1:67108800-67109000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:67108800-67109200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:67108800-67109200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:67108800-67109200	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr1:67108800-67109400	Enhancers	Brain Angular Gyrus	brain
34	chr1:67108800-67109600	Enhancers	Brain Cingulate Gyrus	brain

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