Variant report

Variant	rs1445615
Chromosome Location	chr11:105538150-105538151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1037089	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10791765	0.93[ASN][1000 genomes]
rs1348676	0.85[AFR][1000 genomes]
rs1445608	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1445616	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1822988	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1838666	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1942968	0.86[ASN][1000 genomes]
rs1942969	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1942970	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6591139	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6591140	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7130919	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7929601	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7934957	1.00[ASN][1000 genomes]
rs7940036	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105524200-105556800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105537200-105540200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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