Variant report

Variant	rs6591140
Chromosome Location	chr11:105542937-105542938
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1037089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226826	0.85[JPT][hapmap]
rs11226850	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1348676	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1445608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445615	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1445616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17104532	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs17104549	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1822988	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1838666	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942969	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942970	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121062	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs561015	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58674482	0.82[ASN][1000 genomes]
rs58685674	0.82[ASN][1000 genomes]
rs59209066	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61476171	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs635980	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6591139	1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs667713	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7108004	0.82[ASN][1000 genomes]
rs7119216	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7124769	0.85[JPT][hapmap]
rs7130919	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540342	0.82[ASN][1000 genomes]
rs73540343	0.82[ASN][1000 genomes]
rs73540344	0.82[ASN][1000 genomes]
rs73540347	0.82[ASN][1000 genomes]
rs7929601	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7934957	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7940036	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942635	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7947803	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7948845	1.00[JPT][hapmap]
rs7950974	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs973962	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105524200-105556800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105542800-105543400	Enhancers	Pancreatic Islets	Pancreatic Islet

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