Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1037089	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10791765	1.00[JPT][hapmap]
rs11226826	0.85[JPT][hapmap]
rs11226850	0.85[JPT][hapmap]
rs1348676	1.00[JPT][hapmap]
rs1373923	1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445606	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104532	0.85[JPT][hapmap]
rs17104549	0.85[JPT][hapmap]
rs1822984	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1822988	1.00[JPT][hapmap]
rs1838666	1.00[JPT][hapmap]
rs1942968	1.00[JPT][hapmap]
rs1942969	1.00[JPT][hapmap]
rs1942970	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1942976	1.00[ASN][1000 genomes]
rs2121062	0.85[JPT][hapmap]
rs561015	0.85[JPT][hapmap]
rs57833328	0.89[ASN][1000 genomes]
rs635980	0.85[JPT][hapmap]
rs6591139	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6591140	1.00[JPT][hapmap]
rs667713	0.85[JPT][hapmap]
rs7119216	0.85[JPT][hapmap]
rs7124769	0.85[JPT][hapmap]
rs7130919	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7929601	1.00[JPT][hapmap]
rs7940036	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7947803	0.85[JPT][hapmap]
rs7948845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950974	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105484800-105500600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:105485800-105491800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:105490800-105492400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:105490800-105495800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:105491000-105493200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:105491000-105506200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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