Variant report
| Variant | rs1942976 |
|---|---|
| Chromosome Location | chr11:105405470-105405471 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr11:105405270-105405511 | HepG2 | liver: | n/a | chr11:105405342-105405358 chr11:105405343-105405357 chr11:105405340-105405360 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254998 | TF binding region |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs1373923 | 1.00[ASN][1000 genomes] |
| rs1445606 | 1.00[ASN][1000 genomes] |
| rs1822984 | 0.92[ASN][1000 genomes] |
| rs57833328 | 0.89[ASN][1000 genomes] |
| rs7948845 | 1.00[ASN][1000 genomes] |
| rs7950974 | 1.00[ASN][1000 genomes] |
| rs973962 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949337 | chr11:104950007-105510193 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
