Variant report

Variant	rs1822984
Chromosome Location	chr11:105492971-105492972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1373923	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1445606	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1942976	0.92[ASN][1000 genomes]
rs57833328	0.96[ASN][1000 genomes]
rs7948845	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7950974	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs973962	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105484800-105500600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:105490800-105495800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105491000-105493200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:105491000-105506200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:105492400-105493400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:105492800-105493400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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