Variant report

Variant	rs1373923
Chromosome Location	chr11:105487333-105487334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1037089	1.00[CHB][hapmap]
rs1445606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822984	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1942970	1.00[CHB][hapmap]
rs1942976	1.00[ASN][1000 genomes]
rs57833328	0.89[ASN][1000 genomes]
rs6591139	1.00[CHB][hapmap]
rs7130919	1.00[CHB][hapmap]
rs7940036	1.00[CHB][hapmap]
rs7948845	1.00[CHB][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950974	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973962	1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105479800-105488600	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr11:105484000-105488600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:105484400-105488200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:105484800-105500600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:105485800-105488400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:105485800-105488600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:105485800-105491800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:105486000-105488600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:105486000-105488600	Weak transcription	Brain Substantia Nigra	brain
10	chr11:105486000-105489400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:105486200-105488200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:105486200-105488400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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