Variant report

Variant	rs7119216
Chromosome Location	chr11:105653069-105653070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105648714..105650582-chr11:105651736..105654609,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1037089	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs10791765	0.85[JPT][hapmap]
rs11226826	1.00[JPT][hapmap]
rs11226850	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348676	0.85[JPT][hapmap]
rs1445608	0.82[ASN][1000 genomes]
rs17104532	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17104549	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104577	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17104583	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17104598	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17104609	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes]
rs17104611	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes]
rs1822988	0.85[JPT][hapmap]
rs1838666	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1942968	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1942969	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1942970	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2121062	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs561015	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs58674482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58685674	1.00[ASN][1000 genomes]
rs59209066	0.93[ASN][1000 genomes]
rs597395	1.00[CHB][hapmap]
rs61476171	1.00[ASN][1000 genomes]
rs626633	1.00[CHB][hapmap]
rs635980	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs641435	1.00[CHB][hapmap]
rs643063	1.00[CHB][hapmap]
rs6591139	0.85[JPT][hapmap]
rs6591140	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs667713	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7108004	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7130919	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs73540342	1.00[ASN][1000 genomes]
rs73540343	1.00[ASN][1000 genomes]
rs73540344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73554208	0.86[ASN][1000 genomes]
rs7929601	0.85[JPT][hapmap]
rs7938516	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7940036	0.85[JPT][hapmap]
rs7942635	0.89[ASN][1000 genomes]
rs7947803	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7948845	0.85[JPT][hapmap]
rs7950974	0.85[JPT][hapmap]
rs973962	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1829261	chr11:105614894-105698982	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105634600-105653800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105651800-105653400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:105651800-105653600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:105651800-105653800	Enhancers	Brain Angular Gyrus	brain
5	chr11:105652000-105653200	Weak transcription	Brain Substantia Nigra	brain
6	chr11:105652000-105653400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:105652200-105657400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:105652400-105653600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:105652600-105657200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:105652600-105657400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:105652800-105653800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:105652800-105654600	Weak transcription	Brain Germinal Matrix	brain
13	chr11:105653000-105653600	Enhancers	Brain Anterior Caudate	brain
14	chr11:105653000-105654800	Enhancers	Brain Hippocampus Middle	brain

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