Variant report

Variant	rs17104598
Chromosome Location	chr11:105693503-105693504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11226826	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs11226850	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17104532	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs17104549	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs17104577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104583	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17104609	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17104611	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2121062	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs41445847	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs561015	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs56119188	0.80[ASN][1000 genomes]
rs58674482	0.83[ASN][1000 genomes]
rs58685674	0.83[ASN][1000 genomes]
rs597395	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs61476171	0.83[ASN][1000 genomes]
rs626633	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs635980	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs641435	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs643063	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs667713	0.86[JPT][hapmap]
rs7108004	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7119216	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7124769	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs72987139	0.86[ASN][1000 genomes]
rs72987142	0.86[ASN][1000 genomes]
rs72987143	0.80[ASN][1000 genomes]
rs72991087	0.80[ASN][1000 genomes]
rs73540342	0.83[ASN][1000 genomes]
rs73540343	0.83[ASN][1000 genomes]
rs73540344	0.83[ASN][1000 genomes]
rs73540347	0.83[ASN][1000 genomes]
rs73554208	0.96[ASN][1000 genomes]
rs7938516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7947803	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829261	chr11:105614894-105698982	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105691000-105693800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:105691400-105702000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:105692800-105695200	Weak transcription	Brain Inferior Temporal Lobe	brain

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