Variant report

Variant	rs597395
Chromosome Location	chr11:105721469-105721470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11226826	1.00[CHD][hapmap]
rs11226850	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs17104532	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs17104549	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs17104577	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17104583	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17104598	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs17104609	1.00[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap]
rs17104611	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs2121062	1.00[CHD][hapmap]
rs35584317	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs502300	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs561015	1.00[CHD][hapmap]
rs56119188	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs626633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs635980	1.00[CHD][hapmap]
rs641435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs643063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7108004	1.00[CHB][hapmap]
rs7119216	1.00[CHB][hapmap]
rs7124769	1.00[CHB][hapmap]
rs72987139	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72987142	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72987143	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72991080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72991087	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7938516	1.00[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105716200-105728400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105716400-105728000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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