Variant report

Variant	rs7108004
Chromosome Location	chr11:105656422-105656423
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105655033..105656617-chr11:105660344..105661904,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1037089	0.82[ASN][1000 genomes]
rs11226826	0.86[JPT][hapmap]
rs11226850	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445608	0.82[ASN][1000 genomes]
rs17104532	1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[ASN][1000 genomes]
rs17104549	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104577	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17104583	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17104598	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17104609	1.00[CHB][hapmap]
rs17104611	1.00[CHB][hapmap]
rs1838666	0.82[ASN][1000 genomes]
rs1942968	0.82[ASN][1000 genomes]
rs1942969	0.82[ASN][1000 genomes]
rs1942970	0.82[ASN][1000 genomes]
rs2121062	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs561015	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs58674482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58685674	1.00[ASN][1000 genomes]
rs59209066	0.93[ASN][1000 genomes]
rs597395	1.00[CHB][hapmap]
rs61476171	1.00[ASN][1000 genomes]
rs626633	1.00[CHB][hapmap]
rs635980	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs641435	1.00[CHB][hapmap]
rs643063	1.00[CHB][hapmap]
rs6591140	0.82[ASN][1000 genomes]
rs667713	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs7119216	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124769	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7130919	0.82[ASN][1000 genomes]
rs73540342	1.00[ASN][1000 genomes]
rs73540343	1.00[ASN][1000 genomes]
rs73540344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540347	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73554208	0.86[ASN][1000 genomes]
rs7938516	1.00[CHB][hapmap]
rs7942635	0.89[ASN][1000 genomes]
rs7947803	0.86[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1829261	chr11:105614894-105698982	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105652200-105657400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:105652600-105657200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:105652600-105657400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:105653600-105657400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:105653800-105657400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:105654400-105657200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:105654800-105657200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:105654800-105657200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:105654800-105657400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:105654800-105657600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:105655400-105657200	Weak transcription	Brain Germinal Matrix	brain
12	chr11:105655600-105657400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:105655800-105660400	Weak transcription	Brain Substantia Nigra	brain

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