Variant report

Variant	rs7947803
Chromosome Location	chr11:105569782-105569783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1037089	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10791765	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11226826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs11226850	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1348676	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1445608	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1445616	1.00[EUR][1000 genomes]
rs17104532	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17104549	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17104577	0.86[JPT][hapmap]
rs17104583	0.86[JPT][hapmap]
rs17104598	0.86[JPT][hapmap]
rs17104609	0.86[JPT][hapmap]
rs17104611	0.86[JPT][hapmap]
rs1822988	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs1838666	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1942968	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1942969	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1942970	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2121062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs561015	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58674482	0.89[ASN][1000 genomes]
rs58685674	0.89[ASN][1000 genomes]
rs59209066	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61476171	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs635980	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591139	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs6591140	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs667713	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108004	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs7119216	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7124769	1.00[JPT][hapmap]
rs7130919	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73540342	0.89[ASN][1000 genomes]
rs73540343	0.89[ASN][1000 genomes]
rs73540344	0.89[ASN][1000 genomes]
rs73540347	0.89[ASN][1000 genomes]
rs7929601	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7934957	1.00[EUR][1000 genomes]
rs7938516	0.86[JPT][hapmap]
rs7940036	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7942635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948845	0.85[JPT][hapmap]
rs7950974	0.85[JPT][hapmap]
rs973962	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105561400-105586200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105568200-105570200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:105568200-105571600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:105568200-105572000	Enhancers	Brain Substantia Nigra	brain
6	chr11:105568400-105570400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:105568600-105570200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:105568600-105570800	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:105568600-105571600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:105568600-105576400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:105569000-105570600	Enhancers	Brain Hippocampus Middle	brain
12	chr11:105569200-105570200	Enhancers	Brain Germinal Matrix	brain
13	chr11:105569200-105571800	Enhancers	Brain Angular Gyrus	brain
14	chr11:105569400-105571000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:105569600-105569800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:105569600-105570000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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