Variant report

Variant	rs2121062
Chromosome Location	chr11:105563174-105563175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1037089	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10791765	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11226826	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs11226850	0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1348676	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1445608	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1445616	1.00[EUR][1000 genomes]
rs17104532	0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[ASN][1000 genomes]
rs17104549	0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17104577	0.86[JPT][hapmap]
rs17104583	0.86[JPT][hapmap]
rs17104598	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs17104609	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs17104611	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs17104633	1.00[MEX][hapmap]
rs1822988	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs1838666	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1942968	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1942969	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1942970	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs561015	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58674482	0.89[ASN][1000 genomes]
rs58685674	0.89[ASN][1000 genomes]
rs59209066	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs597395	1.00[CHD][hapmap]
rs61476171	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs635980	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591139	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs6591140	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs667713	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108004	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs7119216	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7124769	1.00[JPT][hapmap]
rs7130919	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73540342	0.89[ASN][1000 genomes]
rs73540343	0.89[ASN][1000 genomes]
rs73540344	0.89[ASN][1000 genomes]
rs73540347	0.89[ASN][1000 genomes]
rs7929601	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7934957	1.00[EUR][1000 genomes]
rs7938516	0.86[JPT][hapmap]
rs7940036	0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7942635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948845	0.85[JPT][hapmap]
rs7950974	0.85[JPT][hapmap]
rs973962	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105561400-105568400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105561400-105586200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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