Variant report

Variant	rs1446195
Chromosome Location	chr11:25002471-25002472
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12271132	1.00[CHB][hapmap]
rs12278764	0.93[ASN][1000 genomes]
rs12278802	0.93[ASN][1000 genomes]
rs1446191	0.80[ASN][1000 genomes]
rs1446194	0.93[ASN][1000 genomes]
rs1562269	1.00[EUR][1000 genomes]
rs1562270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484091	0.93[ASN][1000 genomes]
rs7948210	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052730	chr11:24695821-25272497	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1053055	chr11:24700012-25293551	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv34111	chr11:24802669-25090774	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34012	chr11:24831174-25090774	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv553827	chr11:24858636-25379281	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv897100	chr11:24913489-25085296	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv897101	chr11:24913489-25088584	Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv897102	chr11:24913489-25140302	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv897103	chr11:24913489-25145902	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv897104	chr11:24913489-25160036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv897105	chr11:24913489-25169641	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv897106	chr11:24934662-25061347	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv897107	chr11:24934662-25071432	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv897108	chr11:24934662-25096309	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv897109	chr11:24934662-25115305	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv897110	chr11:24934662-25133782	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv897111	chr11:24934662-25140302	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv467758	chr11:24969228-25061347	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv553828	chr11:24969228-25061347	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv897112	chr11:24997660-25133782	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv897113	chr11:24997660-25169641	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25001600-25002800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:25001600-25003200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:25001600-25003200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:25002000-25002800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:25002200-25002800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:25002200-25002800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:25002200-25003000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:25002200-25003000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:25002400-25002800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr11:25002400-25003400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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