Variant report

Variant	rs1447092
Chromosome Location	chr4:106558105-106558106
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106557959..106560192-chr4:106563157..106566031,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10452180	0.83[EUR][1000 genomes]
rs28447043	1.00[EUR][1000 genomes]
rs6839747	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
2	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
4	chr4:106545800-106558600	Weak transcription	Left Ventricle	heart
5	chr4:106546000-106558200	Weak transcription	Brain Substantia Nigra	brain
6	chr4:106549600-106558600	Weak transcription	Gastric	stomach
7	chr4:106550600-106559400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:106552400-106558400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:106552800-106558200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:106552800-106558400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:106552800-106558400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:106553200-106559000	Weak transcription	Fetal Kidney	kidney
13	chr4:106553600-106558800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:106554000-106558600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:106554800-106558400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:106555200-106558200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:106555400-106558400	Weak transcription	Small Intestine	intestine
18	chr4:106555400-106558400	Weak transcription	NHEK	skin
19	chr4:106555400-106558600	Weak transcription	Stomach Mucosa	stomach
20	chr4:106555400-106558600	Weak transcription	HMEC	breast
21	chr4:106556000-106558200	Weak transcription	Brain Anterior Caudate	brain
22	chr4:106556000-106558600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:106556000-106558600	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:106556000-106558600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr4:106556000-106558600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:106556200-106558200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:106556200-106558600	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:106556400-106558400	Weak transcription	GM12878-XiMat	blood
29	chr4:106556600-106558600	Weak transcription	Fetal Lung	lung
30	chr4:106556800-106558400	Weak transcription	Fetal Heart	heart
31	chr4:106557000-106558800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:106557200-106558200	Weak transcription	Fetal Brain Male	brain
33	chr4:106557800-106558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr4:106558000-106558400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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