Variant report

Variant	rs28447043
Chromosome Location	chr4:106563907-106563908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10452180	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1447092	1.00[EUR][1000 genomes]
rs6839747	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
2	chr4:106559200-106577800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:106559400-106564200	Weak transcription	Small Intestine	intestine
4	chr4:106559400-106576600	Weak transcription	Fetal Intestine Large	intestine
5	chr4:106559400-106580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:106559400-106580200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:106559400-106602800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:106559800-106565200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:106560000-106565600	Weak transcription	Fetal Lung	lung
10	chr4:106563400-106565400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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