Variant report

Variant	rs1447131
Chromosome Location	chr6:55751496-55751497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:55313713..55314676-chr6:55750196..55751674,4	MCF-7	breast:
2	chr6:55314098..55314636-chr6:55750998..55751586,2	MCF-7	breast:
3	chr6:55310131..55310914-chr6:55750826..55751625,3	MCF-7	breast:
4	chr6:55751118..55751828-chr6:55818205..55818779,2	MCF-7	breast:
5	chr6:55481775..55483073-chr6:55750730..55751770,11	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12198217	0.85[EUR][1000 genomes]
rs1374550	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1447128	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1447132	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1562408	0.85[EUR][1000 genomes]
rs1838946	0.88[EUR][1000 genomes]
rs1868031	0.81[ASN][1000 genomes]
rs2021803	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2028956	0.88[EUR][1000 genomes]
rs2044543	0.85[EUR][1000 genomes]
rs2056424	0.85[EUR][1000 genomes]
rs3734444	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs3798819	0.81[JPT][hapmap]
rs3807016	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4715567	1.00[JPT][hapmap]
rs4715570	0.85[EUR][1000 genomes]
rs4715571	0.85[CEU][hapmap]
rs6459112	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6459113	0.85[EUR][1000 genomes]
rs6912214	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6925961	0.85[EUR][1000 genomes]
rs6926331	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6932412	0.88[EUR][1000 genomes]
rs72870626	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752119	0.85[EUR][1000 genomes]
rs7755393	0.80[EUR][1000 genomes]
rs7758580	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9296807	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9296809	0.85[EUR][1000 genomes]
rs9296810	0.85[EUR][1000 genomes]
rs9464298	1.00[JPT][hapmap]
rs9464303	0.85[EUR][1000 genomes]
rs9475467	0.85[EUR][1000 genomes]
rs9475469	0.85[EUR][1000 genomes]
rs9475471	0.85[EUR][1000 genomes]
rs978930	0.89[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1032684	chr6:55680473-55766876	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55749600-55751600	Enhancers	Fetal Lung	lung
2	chr6:55751200-55752200	Enhancers	HepG2	liver
3	chr6:55751400-55751600	Enhancers	Hela-S3	cervix
4	chr6:55751400-55751800	Enhancers	A549	lung

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