Variant report

Variant	rs7758580
Chromosome Location	chr6:55767358-55767359
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55760290..55762374-chr6:55767018..55769076,2	MCF-7	breast:
2	chr6:55765849..55767461-chr6:55770096..55772220,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12199367	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12209768	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1374550	0.90[JPT][hapmap]
rs1447128	0.84[ASN][1000 genomes]
rs1447131	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1447132	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1838946	0.83[ASN][1000 genomes]
rs1868031	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2021803	0.91[JPT][hapmap]
rs2044542	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3734444	0.91[JPT][hapmap]
rs3807016	0.91[JPT][hapmap]
rs4574618	0.89[EUR][1000 genomes]
rs4599631	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4715567	0.91[JPT][hapmap]
rs4715571	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs6459111	0.83[ASN][1000 genomes]
rs6459112	0.84[ASN][1000 genomes]
rs6459115	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6459116	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6459118	0.88[EUR][1000 genomes]
rs6912214	0.91[JPT][hapmap]
rs6926331	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72870626	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7755388	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7770068	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9296807	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464298	0.91[JPT][hapmap]
rs9475480	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs978930	0.91[JPT][hapmap]
rs9885708	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55762600-55767400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:55763400-55767600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:55763800-55767800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:55766200-55768200	Enhancers	Fetal Intestine Large	intestine
5	chr6:55766200-55768200	Enhancers	Hela-S3	cervix
6	chr6:55766200-55768400	Enhancers	Fetal Intestine Small	intestine
7	chr6:55766600-55768200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:55766800-55768400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:55767000-55767600	Enhancers	A549	lung
10	chr6:55767200-55768200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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