Variant report
| Variant | rs1449118 |
|---|---|
| Chromosome Location | chr14:85017065-85017066 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000188825 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs1349177 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1449093 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1449119 | 1.00[AMR][1000 genomes] |
| rs1551012 | 1.00[AMR][1000 genomes] |
| rs1597281 | 1.00[AMR][1000 genomes] |
| rs1823326 | 1.00[AMR][1000 genomes] |
| rs1868450 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2998300 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2998310 | 1.00[AMR][1000 genomes] |
| rs3008486 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3008487 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3008489 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs962665 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751288 | chr14:84815330-85704047 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046875 | chr14:84993510-85193250 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1052415 | chr14:85001891-85078853 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:85012400-85017600 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
