Variant report
| Variant | rs2998310 |
|---|---|
| Chromosome Location | chr14:85018576-85018577 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:85016633..85019613-chr17:41466206..41467718,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000188825 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1349177 | 1.00[AMR][1000 genomes] |
| rs1449093 | 1.00[AMR][1000 genomes] |
| rs1449096 | 0.81[AFR][1000 genomes] |
| rs1449118 | 1.00[AMR][1000 genomes] |
| rs1449119 | 1.00[AMR][1000 genomes] |
| rs1551011 | 0.95[AFR][1000 genomes] |
| rs1551012 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1597281 | 1.00[AMR][1000 genomes] |
| rs1823326 | 1.00[AMR][1000 genomes] |
| rs1868450 | 1.00[AMR][1000 genomes] |
| rs2998300 | 1.00[AMR][1000 genomes] |
| rs3008486 | 1.00[AMR][1000 genomes] |
| rs3008487 | 1.00[AMR][1000 genomes] |
| rs3008489 | 1.00[AMR][1000 genomes] |
| rs962665 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751288 | chr14:84815330-85704047 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046875 | chr14:84993510-85193250 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1052415 | chr14:85001891-85078853 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
