Variant report

Variant	rs1449870
Chromosome Location	chr3:24176977-24176978
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24170949..24173719-chr3:24175098..24176977,4	K562	blood:
2	chr3:24175902..24178335-chr3:24178418..24180590,2	MCF-7	breast:
3	chr3:24171147..24173719-chr3:24174806..24177667,3	K562	blood:
4	chr3:24176023..24178197-chr3:24178620..24181461,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11713246	0.85[JPT][hapmap]
rs12497944	0.82[JPT][hapmap]
rs13325754	0.82[JPT][hapmap]
rs1449871	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1799888	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1868573	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2063481	1.00[JPT][hapmap]
rs2089848	1.00[JPT][hapmap]
rs2360959	0.84[CHB][hapmap]
rs3772382	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4131864	0.82[JPT][hapmap]
rs4858103	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6769645	0.91[EUR][1000 genomes]
rs9310729	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:24162800-24178200	Weak transcription	Spleen	Spleen
3	chr3:24165800-24179000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:24167000-24197800	Weak transcription	K562	blood
5	chr3:24167800-24187800	Weak transcription	Small Intestine	intestine
6	chr3:24168600-24179200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:24168800-24181200	Weak transcription	Brain Angular Gyrus	brain
8	chr3:24169000-24187800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:24169800-24186200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:24170000-24178200	Weak transcription	Gastric	stomach
11	chr3:24170200-24178200	Weak transcription	Stomach Mucosa	stomach
12	chr3:24170800-24184600	Weak transcription	Brain Anterior Caudate	brain
13	chr3:24171000-24177400	Strong transcription	Fetal Intestine Small	intestine
14	chr3:24171000-24178200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:24171400-24186200	Strong transcription	Fetal Intestine Large	intestine
16	chr3:24171600-24178800	Weak transcription	HMEC	breast
17	chr3:24171600-24179200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:24172000-24178200	Weak transcription	Psoas Muscle	Psoas
19	chr3:24173000-24187400	Weak transcription	Fetal Brain Male	brain
20	chr3:24173600-24179000	Weak transcription	HepG2	liver
21	chr3:24173600-24179400	Weak transcription	Esophagus	oesophagus
22	chr3:24173600-24188200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:24173800-24183200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:24174000-24183400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:24174200-24182800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:24174400-24184800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:24174800-24177000	Genic enhancers	Fetal Stomach	stomach
28	chr3:24174800-24177400	Enhancers	Colon Smooth Muscle	Colon
29	chr3:24174800-24178400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr3:24175000-24177200	Enhancers	Rectal Smooth Muscle	rectum
31	chr3:24175200-24177200	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr3:24175400-24177200	Enhancers	Placenta	Placenta
33	chr3:24175400-24179000	Weak transcription	Left Ventricle	heart
34	chr3:24175800-24187800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:24176200-24177200	Enhancers	Right Ventricle	heart
36	chr3:24176200-24177200	Enhancers	NHDF-Ad	bronchial
37	chr3:24176200-24178200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:24176400-24177200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:24176400-24177200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:24176400-24177200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:24176400-24177200	Enhancers	Adipose Nuclei	Adipose
42	chr3:24176400-24177200	Enhancers	Aorta	Aorta
43	chr3:24176400-24177200	Genic enhancers	Fetal Lung	lung
44	chr3:24176400-24177200	Enhancers	NHLF	lung
45	chr3:24176400-24179000	Weak transcription	Lung	lung
46	chr3:24176400-24179400	Weak transcription	Liver	Liver
47	chr3:24176600-24177000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:24176600-24177000	Enhancers	Placenta Amnion	Placenta Amnion
49	chr3:24176600-24178600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr3:24176600-24179000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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