Variant report

Variant	rs1449871
Chromosome Location	chr3:24183115-24183116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1449870	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1799888	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1868573	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3772382	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858103	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769645	0.89[EUR][1000 genomes]
rs9310729	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:24167000-24197800	Weak transcription	K562	blood
3	chr3:24167800-24187800	Weak transcription	Small Intestine	intestine
4	chr3:24169000-24187800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:24169800-24186200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:24170800-24184600	Weak transcription	Brain Anterior Caudate	brain
7	chr3:24171400-24186200	Strong transcription	Fetal Intestine Large	intestine
8	chr3:24173000-24187400	Weak transcription	Fetal Brain Male	brain
9	chr3:24173600-24188200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:24173800-24183200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:24174000-24183400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:24174400-24184800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:24175800-24187800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:24176800-24186400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:24177200-24186200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:24177200-24186200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:24177200-24186200	Weak transcription	Placenta	Placenta
18	chr3:24178400-24183800	Enhancers	Rectal Smooth Muscle	rectum
19	chr3:24178400-24186200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:24178600-24185400	Strong transcription	Adipose Nuclei	Adipose
21	chr3:24179000-24186200	Weak transcription	NHLF	lung
22	chr3:24179800-24183400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:24179800-24187800	Weak transcription	Spleen	Spleen
24	chr3:24180000-24185000	Weak transcription	Gastric	stomach
25	chr3:24180000-24185200	Weak transcription	Lung	lung
26	chr3:24180000-24186400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
28	chr3:24180200-24187000	Weak transcription	Right Ventricle	heart
29	chr3:24180400-24183600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:24180400-24186200	Weak transcription	Stomach Mucosa	stomach
31	chr3:24180400-24186200	Weak transcription	HSMMtube	muscle
32	chr3:24180600-24186400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:24180600-24186800	Weak transcription	HMEC	breast
34	chr3:24181200-24184200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:24181200-24184200	Weak transcription	Left Ventricle	heart
36	chr3:24181200-24186000	Weak transcription	NHDF-Ad	bronchial
37	chr3:24181200-24187800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:24181200-24187800	Weak transcription	Right Atrium	heart
39	chr3:24181400-24187800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr3:24181600-24183600	Weak transcription	Brain Angular Gyrus	brain
41	chr3:24181600-24184000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr3:24181600-24186200	Weak transcription	HSMM	muscle
43	chr3:24182000-24186200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr3:24182000-24188000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr3:24182000-24194400	Weak transcription	Fetal Kidney	kidney
46	chr3:24182200-24184200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:24182200-24185400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:24182400-24183200	Weak transcription	Fetal Intestine Small	intestine
49	chr3:24182400-24183400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr3:24182400-24183800	Genic enhancers	Colon Smooth Muscle	Colon

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