Variant report

Variant	rs1451547
Chromosome Location	chr2:187773582-187773583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10497678	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11885750	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1451563	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828479	1.00[EUR][1000 genomes]
rs16828482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58606847	1.00[EUR][1000 genomes]
rs6723908	1.00[EUR][1000 genomes]
rs6744448	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187769400-187773600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:187772800-187774200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:187773000-187775600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:187773200-187774400	Enhancers	Adipose Nuclei	Adipose
5	chr2:187773400-187773600	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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