Variant report

Variant	rs16828482
Chromosome Location	chr2:187791682-187791683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10497678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11885750	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1451547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1451563	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828479	1.00[EUR][1000 genomes]
rs58606847	1.00[EUR][1000 genomes]
rs6723908	1.00[EUR][1000 genomes]
rs6744448	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv528437	chr2:187778830-187907901	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv999207	chr2:187787121-187924667	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv536084	chr2:187787121-187924667	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187785000-187792400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:187790600-187792400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:187790600-187792600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:187790800-187792600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:187791600-187793800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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