Variant report

Variant	rs1458942
Chromosome Location	chr8:9406602-9406603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10092751	0.86[AMR][1000 genomes]
rs10109026	0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11249934	0.98[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap]
rs12155819	0.81[ASW][hapmap];0.95[GIH][hapmap]
rs12156017	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12542457	0.88[GIH][hapmap];0.82[JPT][hapmap]
rs12543959	0.80[YRI][hapmap]
rs12545250	0.91[JPT][hapmap];0.87[AMR][1000 genomes]
rs12676193	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12682175	0.80[JPT][hapmap]
rs13263409	0.83[YRI][hapmap]
rs13270518	0.86[YRI][hapmap]
rs13276086	0.95[GIH][hapmap]
rs1394	0.87[ASW][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.83[YRI][hapmap]
rs4075359	0.82[JPT][hapmap]
rs4128198	0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4840425	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4840426	0.81[ASW][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4840437	0.81[ASW][hapmap]
rs4841196	0.92[GIH][hapmap];0.82[JPT][hapmap]
rs6601327	0.81[ASW][hapmap];0.81[CEU][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.82[MKK][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6601338	0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs6601340	0.82[JPT][hapmap];0.83[MEX][hapmap];0.82[YRI][hapmap]
rs6980728	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6990300	0.81[ASW][hapmap];0.95[GIH][hapmap]
rs6990418	0.91[JPT][hapmap];0.85[AMR][1000 genomes]
rs6994574	0.95[GIH][hapmap]
rs7004937	0.90[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes]
rs7016732	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7461939	0.95[GIH][hapmap]
rs9644677	0.94[ASW][hapmap]
rs9644704	0.91[GIH][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1030524	chr8:9183482-9412833	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1033031	chr8:9310266-9418941	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9390000-9409800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:9404000-9412000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:9404800-9412800	Weak transcription	Right Atrium	heart

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