Variant report

Variant	rs13263409
Chromosome Location	chr8:9536256-9536257
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10081478	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10081565	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10104032	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs10106040	0.83[JPT][hapmap]
rs10111376	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs10794712	0.85[CEU][hapmap]
rs10903315	0.81[CEU][hapmap]
rs10903317	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11249931	0.81[CEU][hapmap]
rs11249937	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11249938	0.83[CEU][hapmap]
rs11249942	0.85[CEU][hapmap]
rs11776236	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11779335	0.85[CEU][hapmap]
rs11785458	0.85[AFR][1000 genomes]
rs11984585	0.80[CEU][hapmap]
rs11993506	0.81[CEU][hapmap]
rs11994420	0.81[CEU][hapmap]
rs12114182	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12114661	0.86[AFR][1000 genomes]
rs12155819	0.91[CHB][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes]
rs12541617	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12542912	0.92[CHB][hapmap]
rs12543959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12544371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12545912	0.84[CEU][hapmap]
rs12677313	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12679180	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12682175	0.81[YRI][hapmap]
rs13249683	0.83[CEU][hapmap]
rs13250951	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13260526	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13264850	0.82[AFR][1000 genomes]
rs13270518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13270801	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13273033	0.85[CEU][hapmap]
rs13276086	0.91[CHB][hapmap]
rs13282006	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1394	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs35316422	0.80[ASN][1000 genomes]
rs4075359	0.87[YRI][hapmap]
rs4129360	0.92[CHB][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs4240629	0.85[CEU][hapmap]
rs4313162	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4535744	0.85[CEU][hapmap]
rs4626603	0.89[CEU][hapmap]
rs4840426	0.80[YRI][hapmap]
rs4840434	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4840437	0.83[YRI][hapmap]
rs4841196	0.95[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4841212	0.85[CEU][hapmap]
rs6601327	0.83[YRI][hapmap]
rs6601334	0.82[CEU][hapmap]
rs6601340	0.86[YRI][hapmap]
rs6601344	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6601350	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6982148	0.92[CHB][hapmap];0.82[YRI][hapmap]
rs6990300	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6994574	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs7003791	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7004937	0.81[YRI][hapmap]
rs7010270	0.85[CEU][hapmap]
rs7461376	0.85[CEU][hapmap]
rs7461939	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs7462070	0.81[ASN][1000 genomes]
rs7462910	0.85[CEU][hapmap]
rs7822700	0.95[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7822904	0.85[CEU][hapmap]
rs7840706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7846399	0.82[AFR][1000 genomes]
rs9644708	0.91[CHB][hapmap]
rs9650638	0.85[CEU][hapmap]
rs9650639	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9504800-9549600	Weak transcription	Pancreas	Pancrea
2	chr8:9509400-9545000	Weak transcription	HSMM	muscle
3	chr8:9510400-9563800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr8:9511000-9564200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:9511400-9537000	Weak transcription	Left Ventricle	heart
6	chr8:9511600-9554600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:9512400-9551400	Weak transcription	Dnd41	blood
8	chr8:9512600-9537200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:9512600-9543800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:9513200-9564200	Weak transcription	Ovary	ovary
11	chr8:9513200-9567400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:9513400-9605400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:9513600-9543600	Weak transcription	Fetal Stomach	stomach
14	chr8:9513800-9563600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:9521000-9544800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:9521400-9544200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:9522000-9545000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:9522400-9546000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:9523800-9545000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr8:9524200-9544600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr8:9528600-9536800	Weak transcription	Primary B cells from cord blood	blood
22	chr8:9528600-9536800	Weak transcription	Brain Angular Gyrus	brain
23	chr8:9529600-9545000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr8:9529600-9545000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:9529600-9549000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:9529600-9606400	Weak transcription	Esophagus	oesophagus
27	chr8:9530000-9538800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr8:9530600-9543800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr8:9530600-9549400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr8:9530800-9543400	Weak transcription	Primary T cells from cord blood	blood
31	chr8:9530800-9549800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr8:9531200-9564000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr8:9532000-9543400	Weak transcription	A549	lung
34	chr8:9532000-9543400	Weak transcription	GM12878-XiMat	blood
35	chr8:9532400-9543400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr8:9532600-9536800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr8:9533200-9536800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr8:9534000-9536400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr8:9534600-9536400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:9534600-9536800	Weak transcription	Brain Anterior Caudate	brain
41	chr8:9534600-9536800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:9534600-9536800	Weak transcription	Fetal Lung	lung
43	chr8:9534600-9538400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:9534800-9536800	Weak transcription	Fetal Heart	heart
45	chr8:9534800-9544600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr8:9534800-9563600	Weak transcription	HepG2	liver
47	chr8:9535000-9536400	Weak transcription	Brain Substantia Nigra	brain
48	chr8:9535000-9537400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr8:9535000-9539800	Weak transcription	Fetal Kidney	kidney
50	chr8:9535000-9543600	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links