Variant report

Variant	rs10106040
Chromosome Location	chr8:9612413-9612414
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10081565	0.80[JPT][hapmap]
rs10087073	0.86[CHB][hapmap]
rs10094989	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10095004	0.91[CHB][hapmap]
rs10099122	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10101132	0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs10102170	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10104032	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10111376	1.00[CEU][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11776236	0.83[JPT][hapmap]
rs11778555	0.91[EUR][1000 genomes]
rs11782886	0.91[EUR][1000 genomes]
rs11785923	0.91[EUR][1000 genomes]
rs12114661	0.88[EUR][1000 genomes]
rs12155819	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs12542457	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs12542912	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs12543959	0.83[JPT][hapmap]
rs12544371	0.83[JPT][hapmap]
rs12677313	0.81[JPT][hapmap]
rs12679180	0.83[JPT][hapmap]
rs12679956	0.91[EUR][1000 genomes]
rs12682175	0.81[CEU][hapmap]
rs13250951	0.83[JPT][hapmap]
rs13260526	0.83[JPT][hapmap]
rs13263409	0.83[JPT][hapmap]
rs13264850	0.89[EUR][1000 genomes]
rs13270518	0.82[JPT][hapmap]
rs13272424	0.89[EUR][1000 genomes]
rs13276086	0.89[EUR][1000 genomes]
rs28693548	0.81[AMR][1000 genomes]
rs35316422	0.89[EUR][1000 genomes]
rs35874762	0.84[EUR][1000 genomes]
rs4075359	0.88[CEU][hapmap]
rs4129360	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs4612345	0.90[EUR][1000 genomes]
rs4840437	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4841203	0.91[EUR][1000 genomes]
rs4841204	0.91[EUR][1000 genomes]
rs4841207	0.83[CHB][hapmap]
rs6601350	0.87[EUR][1000 genomes]
rs67711814	0.88[EUR][1000 genomes]
rs6982148	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs6989782	0.87[CHB][hapmap]
rs6992666	0.91[EUR][1000 genomes]
rs6994574	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs7001832	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7003791	0.81[JPT][hapmap]
rs7004915	0.91[CHB][hapmap]
rs7006003	0.91[CHB][hapmap]
rs7006985	0.85[EUR][1000 genomes]
rs7009721	0.91[CHB][hapmap]
rs7014007	0.91[CHB][hapmap]
rs7014663	0.86[EUR][1000 genomes]
rs7459728	0.86[CHB][hapmap]
rs7461939	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs7462070	0.89[EUR][1000 genomes]
rs7840706	0.83[JPT][hapmap]
rs7842207	0.82[CHB][hapmap]
rs7845986	0.82[CHB][hapmap]
rs9644704	0.88[EUR][1000 genomes]
rs9644707	0.91[EUR][1000 genomes]
rs9650639	0.83[JPT][hapmap]
rs9657509	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9550000-9627600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:9557400-9632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:9561000-9616200	Weak transcription	Brain Substantia Nigra	brain
4	chr8:9565000-9616200	Weak transcription	Pancreas	Pancrea
5	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:9585200-9627600	Weak transcription	Hela-S3	cervix
8	chr8:9588600-9626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:9597600-9617000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:9603000-9638800	Weak transcription	Stomach Mucosa	stomach
11	chr8:9604200-9616400	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr8:9604200-9637200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:9604800-9613400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:9604800-9613800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr8:9604800-9617000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:9604800-9617000	Strong transcription	Dnd41	blood
17	chr8:9605000-9614000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr8:9605000-9617000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:9605000-9617000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr8:9605000-9617200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr8:9605200-9613800	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:9605200-9617000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:9605200-9617200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr8:9605400-9612800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr8:9605400-9613000	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr8:9605400-9613400	Strong transcription	Adipose Nuclei	Adipose
27	chr8:9605400-9613400	Strong transcription	Liver	Liver
28	chr8:9605400-9613600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:9605400-9613800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:9605400-9614400	Strong transcription	Placenta	Placenta
31	chr8:9605400-9617000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:9605400-9617000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:9605400-9628200	Strong transcription	Primary T cells from cord blood	blood
34	chr8:9605600-9612600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr8:9605600-9613400	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:9605600-9616400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:9606000-9613400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr8:9606800-9613800	Strong transcription	Primary B cells from cord blood	blood
39	chr8:9607400-9623200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr8:9608400-9619200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr8:9608400-9625400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr8:9608600-9619000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr8:9608600-9619200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr8:9608600-9619200	Weak transcription	Ovary	ovary
45	chr8:9608800-9615800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr8:9608800-9616000	Weak transcription	Esophagus	oesophagus
47	chr8:9608800-9616000	Weak transcription	Lung	lung
48	chr8:9608800-9616000	Weak transcription	Small Intestine	intestine
49	chr8:9608800-9616200	Weak transcription	Aorta	Aorta
50	chr8:9608800-9626000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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