Variant report

Variant	rs10111376
Chromosome Location	chr8:9615470-9615471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10081478	0.80[ASN][1000 genomes]
rs10081565	0.84[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs10094989	0.88[CEU][hapmap];0.87[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10096462	0.83[CHB][hapmap]
rs10099122	0.82[EUR][1000 genomes]
rs10102170	0.87[CEU][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10104032	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10104145	0.82[AMR][1000 genomes]
rs10106040	1.00[CEU][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11249937	0.87[CHB][hapmap]
rs11776236	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.80[ASN][1000 genomes]
rs11778555	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11782886	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11785923	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12114182	0.84[ASN][1000 genomes]
rs12114661	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12155819	0.83[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12541617	0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12542457	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12542912	0.84[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12543959	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12544371	0.86[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12545250	0.80[CEU][hapmap]
rs12677313	0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.80[ASN][1000 genomes]
rs12679180	0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap]
rs12679956	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12682175	0.80[CEU][hapmap];0.86[YRI][hapmap]
rs13250951	0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap]
rs13260526	0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.80[ASN][1000 genomes]
rs13263409	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs13264850	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13270518	0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap]
rs13270801	0.80[ASN][1000 genomes]
rs13272424	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13276086	0.90[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13282006	0.81[ASN][1000 genomes]
rs1394	0.82[YRI][hapmap]
rs35316422	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35874762	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4075359	0.88[CEU][hapmap]
rs4128198	0.80[CEU][hapmap]
rs4129360	0.84[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4313162	0.81[ASN][1000 genomes]
rs4612345	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4840434	0.81[ASN][1000 genomes]
rs4840437	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4841203	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4841204	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6601338	0.80[CEU][hapmap]
rs6601344	0.81[ASN][1000 genomes]
rs6601350	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67711814	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6982148	0.84[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6990300	0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs6990418	0.80[CEU][hapmap]
rs6992666	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6994574	0.83[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7001832	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7003791	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.80[ASN][1000 genomes]
rs7004937	0.80[CEU][hapmap]
rs7006985	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7014663	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7461939	0.83[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7462070	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7840706	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs9644704	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9644707	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9644708	0.86[CHB][hapmap]
rs9650639	0.86[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs9657509	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv13613	chr8:9614977-9615592	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9550000-9627600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:9557400-9632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:9561000-9616200	Weak transcription	Brain Substantia Nigra	brain
4	chr8:9565000-9616200	Weak transcription	Pancreas	Pancrea
5	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:9585200-9627600	Weak transcription	Hela-S3	cervix
8	chr8:9588600-9626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:9597600-9617000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:9603000-9638800	Weak transcription	Stomach Mucosa	stomach
11	chr8:9604200-9616400	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr8:9604200-9637200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:9604800-9617000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:9604800-9617000	Strong transcription	Dnd41	blood
15	chr8:9605000-9617000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:9605000-9617000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr8:9605000-9617200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr8:9605200-9617000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:9605200-9617200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr8:9605400-9617000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:9605400-9617000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:9605400-9628200	Strong transcription	Primary T cells from cord blood	blood
23	chr8:9605600-9616400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:9607400-9623200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:9608400-9619200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr8:9608400-9625400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr8:9608600-9619000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:9608600-9619200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr8:9608600-9619200	Weak transcription	Ovary	ovary
30	chr8:9608800-9615800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr8:9608800-9616000	Weak transcription	Esophagus	oesophagus
32	chr8:9608800-9616000	Weak transcription	Lung	lung
33	chr8:9608800-9616000	Weak transcription	Small Intestine	intestine
34	chr8:9608800-9616200	Weak transcription	Aorta	Aorta
35	chr8:9608800-9626000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:9609000-9616000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr8:9609000-9616200	Weak transcription	Gastric	stomach
38	chr8:9609400-9621200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:9609600-9616000	Weak transcription	NHLF	lung
40	chr8:9609600-9634600	Weak transcription	Colonic Mucosa	Colon
41	chr8:9610200-9615800	Weak transcription	A549	lung
42	chr8:9610600-9616000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr8:9610600-9616000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr8:9610600-9616000	Weak transcription	Fetal Intestine Small	intestine
45	chr8:9610600-9616000	Weak transcription	Fetal Stomach	stomach
46	chr8:9610600-9616200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr8:9610600-9617200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr8:9610600-9618600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr8:9611000-9619200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr8:9611400-9616200	Weak transcription	Spleen	Spleen

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