Variant report

Variant	rs13260526
Chromosome Location	chr8:9543632-9543633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98217693..98218591-chr8:9543382..9544044,2	MCF-7	breast:
2	chr8:9539321..9541643-chr8:9542322..9544841,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10081478	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10081565	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10104032	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs10106040	0.83[JPT][hapmap]
rs10111376	0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.80[ASN][1000 genomes]
rs10903317	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11249937	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11776236	0.83[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114182	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12114661	0.85[AFR][1000 genomes]
rs12155819	0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs12541617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12542457	0.81[AFR][1000 genomes]
rs12542912	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs12543959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12544371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12677313	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679180	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13250951	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13263409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13264850	0.81[AFR][1000 genomes]
rs13270518	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13270801	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276086	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs13282006	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1394	0.82[YRI][hapmap]
rs35316422	0.82[ASN][1000 genomes]
rs4129360	0.92[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes]
rs4313162	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4840434	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4840437	0.86[YRI][hapmap]
rs4841196	0.82[CEU][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes]
rs6601344	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6601350	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6982148	0.92[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap]
rs6990300	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6992666	0.81[ASN][1000 genomes]
rs6994574	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7003791	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006985	0.81[AFR][1000 genomes]
rs7461939	0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7462070	0.83[ASN][1000 genomes]
rs7822700	0.82[CEU][hapmap];0.86[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7840706	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9644704	0.82[AFR][1000 genomes]
rs9644707	0.81[ASN][1000 genomes]
rs9644708	0.91[CHB][hapmap]
rs9650639	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3359927	chr8:9543443-9543932	Strong transcription Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9504800-9549600	Weak transcription	Pancreas	Pancrea
2	chr8:9509400-9545000	Weak transcription	HSMM	muscle
3	chr8:9510400-9563800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr8:9511000-9564200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:9511600-9554600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:9512400-9551400	Weak transcription	Dnd41	blood
7	chr8:9512600-9543800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr8:9513200-9564200	Weak transcription	Ovary	ovary
9	chr8:9513200-9567400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:9513400-9605400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:9513800-9563600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:9521000-9544800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr8:9521400-9544200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:9522000-9545000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:9522400-9546000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:9523800-9545000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:9524200-9544600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr8:9529600-9545000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:9529600-9545000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:9529600-9549000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:9529600-9606400	Weak transcription	Esophagus	oesophagus
22	chr8:9530600-9543800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr8:9530600-9549400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr8:9530800-9549800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr8:9531200-9564000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr8:9534800-9544600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr8:9534800-9563600	Weak transcription	HepG2	liver
28	chr8:9535000-9544800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr8:9535000-9545400	Weak transcription	Liver	Liver
30	chr8:9535000-9564800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:9535000-9608000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr8:9535400-9560800	Weak transcription	HMEC	breast
33	chr8:9535400-9563800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:9536400-9563400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:9537200-9545000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:9537400-9544600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:9537400-9549400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:9537400-9563600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr8:9537600-9544600	Weak transcription	Fetal Lung	lung
40	chr8:9537600-9592400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr8:9537800-9545200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr8:9538200-9545200	Weak transcription	Brain Angular Gyrus	brain
43	chr8:9538600-9543800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:9538800-9545200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr8:9538800-9546000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr8:9539800-9544000	Weak transcription	Brain Anterior Caudate	brain
47	chr8:9539800-9549800	Weak transcription	Brain Germinal Matrix	brain
48	chr8:9540000-9565400	Weak transcription	Fetal Kidney	kidney
49	chr8:9540200-9544600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr8:9541400-9592200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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