Variant report

Variant	rs1460182
Chromosome Location	chr5:93582509-93582510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93581521..93584447-chr5:93588432..93591299,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10463161	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs10463185	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs10463186	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs11739227	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17083483	0.88[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs1841298	0.82[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs2015009	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2125887	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs4546363	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs55762569	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6890849	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs9686308	0.89[CHB][hapmap];0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv530552	chr5:93416111-93588509	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1024014	chr5:93460441-93655609	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv830406	chr5:93514329-93683512	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1460182	NCF4	trans	lymphoblastoid	seeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93568000-93617200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:93572400-93585400	Weak transcription	Psoas Muscle	Psoas
3	chr5:93572800-93586400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:93578000-93584000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:93578000-93586800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:93578000-93611400	Weak transcription	Hela-S3	cervix
7	chr5:93578400-93584200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:93578600-93584200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:93579000-93585200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:93579200-93584000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:93579600-93617200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:93580200-93583200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:93580400-93583000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:93580800-93583000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:93580800-93583400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr5:93581000-93583000	Enhancers	Fetal Intestine Large	intestine
17	chr5:93581200-93583000	Enhancers	Primary hematopoietic stem cells	blood
18	chr5:93581400-93582600	Weak transcription	Fetal Intestine Small	intestine
19	chr5:93581400-93582800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:93581600-93586600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:93582000-93582600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:93582000-93584200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:93582200-93582600	Enhancers	Primary B cells from cord blood	blood
24	chr5:93582200-93582800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr5:93582200-93583000	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr5:93582400-93582800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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