Variant report

Variant	rs2015009
Chromosome Location	chr5:93576698-93576699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10463161	0.88[CEU][hapmap]
rs10463185	0.88[CEU][hapmap]
rs10463186	0.88[CEU][hapmap]
rs11739227	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1460182	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17083483	0.88[CEU][hapmap]
rs1841298	0.82[CEU][hapmap]
rs2125887	0.88[CEU][hapmap]
rs4546363	0.88[CEU][hapmap]
rs55762569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6890849	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv530552	chr5:93416111-93588509	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1024014	chr5:93460441-93655609	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv830406	chr5:93514329-93683512	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93555600-93578800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:93568000-93617200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:93572200-93577000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:93572200-93577000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:93572200-93577800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:93572200-93578000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:93572400-93585400	Weak transcription	Psoas Muscle	Psoas
8	chr5:93572800-93586400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:93573600-93581200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:93573800-93577600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:93574800-93578200	Enhancers	Fetal Brain Male	brain
12	chr5:93575000-93577200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:93575000-93578200	Enhancers	Liver	Liver
14	chr5:93575200-93577000	Enhancers	Fetal Brain Female	brain
15	chr5:93575200-93577200	Enhancers	Brain Germinal Matrix	brain
16	chr5:93575200-93577400	Enhancers	Adipose Nuclei	Adipose
17	chr5:93575200-93578000	Enhancers	Fetal Stomach	stomach
18	chr5:93575600-93576800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:93575600-93577400	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr5:93575600-93578200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr5:93575600-93578200	Enhancers	Fetal Lung	lung
22	chr5:93575600-93578200	Enhancers	Rectal Smooth Muscle	rectum
23	chr5:93575800-93576800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:93575800-93577200	Enhancers	Brain Hippocampus Middle	brain
25	chr5:93575800-93577200	Enhancers	HSMM	muscle
26	chr5:93575800-93577400	Enhancers	Brain Cingulate Gyrus	brain
27	chr5:93575800-93577400	Enhancers	Colon Smooth Muscle	Colon
28	chr5:93575800-93578000	Enhancers	NHDF-Ad	bronchial
29	chr5:93576000-93577400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:93576000-93578000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr5:93576000-93579600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:93576200-93577000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr5:93576200-93577400	Enhancers	NHLF	lung
34	chr5:93576200-93578400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr5:93576200-93579400	Enhancers	HMEC	breast
36	chr5:93576400-93576800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:93576400-93577000	Enhancers	Fetal Muscle Leg	muscle
38	chr5:93576400-93577200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr5:93576400-93577400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:93576400-93577400	Enhancers	Ovary	ovary
41	chr5:93576400-93577600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr5:93576400-93577600	Enhancers	HSMMtube	muscle
43	chr5:93576400-93577800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr5:93576400-93578200	Enhancers	NHEK	skin
45	chr5:93576400-93579400	Weak transcription	Stomach Mucosa	stomach
46	chr5:93576400-93580000	Enhancers	Osteobl	bone
47	chr5:93576600-93576800	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr5:93576600-93576800	Enhancers	NH-A	brain
49	chr5:93576600-93577000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr5:93576600-93577000	Enhancers	Brain Anterior Caudate	brain

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