Variant report
Variant | rs1461651 |
---|---|
Chromosome Location | chr14:25214880-25214881 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10220374 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10782460 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11158905 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12147401 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1461638 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1461639 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1461640 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1461648 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1461650 | 0.98[ASN][1000 genomes] |
rs1461652 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs17795514 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs35288201 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4453391 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4587894 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6574011 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs7492508 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1041336 | chr14:24726564-25527319 | Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
2 | nsv542000 | chr14:24726564-25527319 | Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
3 | nsv901504 | chr14:25184210-25646203 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:25214600-25215000 | Active TSS | Sigmoid Colon | Sigmoid Colon |