Variant report

Variant	rs1461652
Chromosome Location	chr14:25214913-25214914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10220374	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10782460	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158905	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12147401	0.89[EUR][1000 genomes]
rs1461638	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1461639	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1461640	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1461648	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1461650	0.96[ASN][1000 genomes]
rs1461651	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17795514	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35288201	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4453391	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4587894	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6574011	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7492508	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25214600-25215000	Active TSS	Sigmoid Colon	Sigmoid Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links