Variant report

Variant	rs146203986
Chromosome Location	chr13:96743249-96743250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96705694..96707387-chr13:96740919..96743720,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102595	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1051574	chr13:96550653-96779248	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1040320	chr13:96573646-96790859	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv3512096	chr13:96741726-96744649	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3512098	chr13:96741726-96744649	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3404879	chr13:96741976-96744524	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv12852	chr13:96742204-96743379	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96741600-96744200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr13:96741800-96743400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
3	chr13:96741800-96743400	Bivalent/Poised TSS	Right Ventricle	heart
4	chr13:96741800-96743600	Active TSS	Brain Substantia Nigra	brain
5	chr13:96741800-96744000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:96741800-96744400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr13:96741800-96744400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr13:96741800-96744400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
9	chr13:96741800-96744600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr13:96741800-96744600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr13:96741800-96746000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr13:96742000-96743400	Bivalent/Poised TSS	NHLF	lung
13	chr13:96742000-96743600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:96742000-96743600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:96742000-96743800	Bivalent/Poised TSS	A549	lung
16	chr13:96742000-96743800	Bivalent/Poised TSS	HSMM	muscle
17	chr13:96742000-96744000	Bivalent/Poised TSS	Psoas Muscle	Psoas
18	chr13:96742000-96744200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr13:96742000-96744200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
20	chr13:96742000-96744200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr13:96742000-96744200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr13:96742000-96744200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
23	chr13:96742000-96744400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
24	chr13:96742000-96744400	Active TSS	Aorta	Aorta
25	chr13:96742200-96743400	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:96742200-96743400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:96742200-96743400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr13:96742200-96743400	Active TSS	Fetal Brain Female	brain
29	chr13:96742200-96743400	Bivalent/Poised TSS	Thymus	Thymus
30	chr13:96742200-96743600	Active TSS	Brain Angular Gyrus	brain
31	chr13:96742200-96743800	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr13:96742200-96744000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
33	chr13:96742200-96744000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
34	chr13:96742200-96744200	Bivalent/Poised TSS	HepG2	liver
35	chr13:96742400-96743400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr13:96742400-96743400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr13:96742400-96743400	Active TSS	Muscle Satellite Cultured Cells	--
38	chr13:96742400-96743400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr13:96742400-96743400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr13:96742400-96743400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr13:96742400-96743400	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr13:96742400-96743400	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
43	chr13:96742400-96743400	Active TSS	Left Ventricle	heart
44	chr13:96742400-96743400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
45	chr13:96742400-96743400	Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr13:96742400-96743400	Bivalent/Poised TSS	NH-A	brain
47	chr13:96742400-96743600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr13:96742400-96743600	Active TSS	Brain Anterior Caudate	brain
49	chr13:96742400-96743600	Active TSS	Brain Cingulate Gyrus	brain
50	chr13:96742400-96743800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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