Variant report

Variant	rs1462325
Chromosome Location	chr3:110568255-110568256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10049325	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10511290	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13080214	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13093547	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1350980	0.87[ASN][1000 genomes]
rs1462793	0.83[ASN][1000 genomes]
rs1462801	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1462807	0.85[ASN][1000 genomes]
rs1564056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1585594	0.83[ASN][1000 genomes]
rs1599663	0.83[ASN][1000 genomes]
rs1599664	0.83[ASN][1000 genomes]
rs1824666	0.83[ASN][1000 genomes]
rs1903759	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1993802	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1993803	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2100875	0.83[ASN][1000 genomes]
rs2399367	0.87[ASN][1000 genomes]
rs2399368	0.87[ASN][1000 genomes]
rs2399370	0.92[ASN][1000 genomes]
rs2399371	0.88[ASN][1000 genomes]
rs4234401	0.87[ASN][1000 genomes]
rs4682028	0.83[ASN][1000 genomes]
rs4682212	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4682215	0.87[ASN][1000 genomes]
rs67832786	0.83[ASN][1000 genomes]
rs6787921	0.86[ASN][1000 genomes]
rs6805399	0.88[ASN][1000 genomes]
rs6808847	0.92[ASN][1000 genomes]
rs71618767	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7623003	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9839299	0.83[ASN][1000 genomes]
rs9874206	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9876543	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110556400-110587200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:110567800-110571200	Weak transcription	Dnd41	blood

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