Variant report

Variant	rs1993803
Chromosome Location	chr3:110595466-110595467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10049325	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511290	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1075303	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13080214	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13093547	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1350980	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1381837	0.82[JPT][hapmap]
rs1462325	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1462789	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1462790	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1462793	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1462795	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1462801	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462807	0.86[ASN][1000 genomes]
rs1564056	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580288	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1585594	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1599663	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1599664	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1824666	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1903755	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1903759	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1993802	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100875	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2399367	0.88[ASN][1000 genomes]
rs2399368	0.88[ASN][1000 genomes]
rs2399370	0.94[ASN][1000 genomes]
rs2399371	0.89[ASN][1000 genomes]
rs2399373	0.87[ASW][hapmap];0.86[CHB][hapmap];0.90[MEX][hapmap];0.87[YRI][hapmap]
rs2399378	0.81[EUR][1000 genomes]
rs4102676	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4234401	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4682028	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4682212	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682215	0.88[ASN][1000 genomes]
rs4682229	0.87[ASW][hapmap];0.91[CHB][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.87[YRI][hapmap]
rs5000277	0.81[EUR][1000 genomes]
rs6437940	0.81[AMR][1000 genomes]
rs67832786	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6787921	0.88[ASN][1000 genomes]
rs6805399	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6808847	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71618767	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs723023	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7623003	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817950	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9826064	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9839299	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9839674	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9874206	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876543	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv980069	chr3:110584636-110595867	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110594200-110607600	Weak transcription	H1 Cell Line	embryonic stem cell

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