Variant report

Variant	rs1462776
Chromosome Location	chr4:98239097-98239098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10009327	0.85[ASN][1000 genomes]
rs10021132	0.81[ASN][1000 genomes]
rs10029947	0.81[ASN][1000 genomes]
rs10031646	0.85[ASN][1000 genomes]
rs10452174	0.85[ASN][1000 genomes]
rs11097553	0.81[ASN][1000 genomes]
rs11728761	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11733427	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11733499	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11737720	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11941787	0.81[ASN][1000 genomes]
rs13106175	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13112292	0.87[ASN][1000 genomes]
rs1381823	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1462763	0.81[ASN][1000 genomes]
rs1462775	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2199498	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2199499	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28378393	0.81[ASN][1000 genomes]
rs34817974	0.81[ASN][1000 genomes]
rs4305515	0.81[ASN][1000 genomes]
rs4320142	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4359906	0.81[ASN][1000 genomes]
rs4538486	0.81[ASN][1000 genomes]
rs55728479	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60666077	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6532664	0.81[ASN][1000 genomes]
rs6532667	0.84[EUR][1000 genomes]
rs6825146	0.82[EUR][1000 genomes]
rs6835997	0.83[ASN][1000 genomes]
rs72880276	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72880277	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7660918	0.85[ASN][1000 genomes]
rs7680378	0.85[ASN][1000 genomes]
rs7684189	0.81[ASN][1000 genomes]
rs7686247	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9917982	0.91[JPT][hapmap]
rs9997275	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830014	chr4:98220259-98419635	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98237800-98239800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:98238200-98239800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:98238200-98239800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:98238200-98239800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:98238200-98240000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:98238200-98240000	Enhancers	Brain Germinal Matrix	brain
7	chr4:98238400-98239600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:98238400-98239800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:98238600-98239200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:98238600-98239600	Weak transcription	Fetal Brain Male	brain
11	chr4:98238600-98240000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:98238800-98239200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:98238800-98239800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:98239000-98239600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:98239000-98239600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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