Variant report

Variant	rs6532667
Chromosome Location	chr4:98207285-98207286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10005664	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10009345	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10012059	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097552	0.83[ASN][1000 genomes]
rs11721540	0.85[ASN][1000 genomes]
rs11721581	0.85[ASN][1000 genomes]
rs11733499	0.83[EUR][1000 genomes]
rs11737720	0.82[EUR][1000 genomes]
rs12641508	0.85[ASN][1000 genomes]
rs12643319	0.83[ASN][1000 genomes]
rs12644668	0.81[ASN][1000 genomes]
rs13105512	0.83[ASN][1000 genomes]
rs13106175	0.83[EUR][1000 genomes]
rs13111598	0.85[ASN][1000 genomes]
rs13115674	0.90[ASN][1000 genomes]
rs13138867	0.85[AMR][1000 genomes]
rs13143522	0.83[ASN][1000 genomes]
rs1350972	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1381823	0.83[EUR][1000 genomes]
rs1462775	0.83[EUR][1000 genomes]
rs1462776	0.84[EUR][1000 genomes]
rs17461098	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2199498	0.83[EUR][1000 genomes]
rs2199499	0.83[EUR][1000 genomes]
rs28452709	0.90[ASN][1000 genomes]
rs28573378	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35196012	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4235429	0.90[ASN][1000 genomes]
rs4320142	0.83[EUR][1000 genomes]
rs4431230	0.85[ASN][1000 genomes]
rs4635822	0.85[ASN][1000 genomes]
rs55728479	0.83[EUR][1000 genomes]
rs60666077	0.83[EUR][1000 genomes]
rs6820487	0.85[ASN][1000 genomes]
rs6824393	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6824861	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72880276	0.83[EUR][1000 genomes]
rs72880277	0.83[EUR][1000 genomes]
rs7686247	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98207000-98208400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links