Variant report

Variant	rs6824861
Chromosome Location	chr4:98160271-98160272
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10005664	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10009345	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10012059	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097552	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11721540	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11721581	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11727665	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12641508	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12643319	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12644668	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13105512	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13111598	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13115674	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13138320	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13138867	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13143522	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1350972	0.95[ASN][1000 genomes]
rs17461098	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28452709	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28573378	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34317866	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35196012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35412870	0.88[EUR][1000 genomes]
rs4235429	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4373162	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4431230	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4635822	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4699546	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6532667	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6820487	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6824393	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98157400-98160600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:98159800-98161600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:98160000-98161600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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