Variant report

Variant	rs1463413
Chromosome Location	chr5:29785147-29785148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10940817	0.80[ASN][1000 genomes]
rs10940827	0.81[CHB][hapmap]
rs11737948	0.80[ASN][1000 genomes]
rs11745229	0.80[ASN][1000 genomes]
rs11745291	0.80[ASN][1000 genomes]
rs12522971	0.84[ASN][1000 genomes]
rs16899407	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs16899419	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs4343854	0.84[ASN][1000 genomes]
rs4458582	0.84[ASN][1000 genomes]
rs4621572	0.84[ASN][1000 genomes]
rs59897238	0.80[ASN][1000 genomes]
rs62348709	0.87[ASN][1000 genomes]
rs62348710	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6888901	0.95[ASN][1000 genomes]
rs72743255	0.81[ASN][1000 genomes]
rs72743256	0.82[ASN][1000 genomes]
rs72743261	0.80[ASN][1000 genomes]
rs72743275	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv830244	chr5:29630122-29790611	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1029329	chr5:29778216-29805002	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3360360	chr5:29783420-29785443	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29781200-29788400	Weak transcription	HepG2	liver
2	chr5:29785000-29785400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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