Variant report

Variant	rs146347174
Chromosome Location	chr9:13166538-13166539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13162633..13164808-chr9:13166006..13168194,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13103200-13175600	Weak transcription	HepG2	liver
2	chr9:13121600-13225200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:13122600-13186400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:13135400-13223600	Weak transcription	Lung	lung
5	chr9:13136000-13192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:13138800-13191800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:13139000-13188200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:13139800-13174800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:13140200-13167800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:13140200-13174800	Weak transcription	Right Ventricle	heart
11	chr9:13141000-13181600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:13141000-13197800	Weak transcription	NHDF-Ad	bronchial
13	chr9:13141200-13188200	Weak transcription	NHLF	lung
14	chr9:13143600-13202200	Weak transcription	Pancreas	Pancrea
15	chr9:13143800-13167800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:13145400-13203200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:13145400-13228600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:13146600-13202400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:13147000-13178000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:13147800-13167000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:13148000-13167600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:13148200-13167600	Weak transcription	NH-A	brain
23	chr9:13150000-13167400	Weak transcription	HSMMtube	muscle
24	chr9:13150000-13193200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:13150400-13180800	Weak transcription	A549	lung
26	chr9:13153000-13167800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:13153200-13194800	Weak transcription	Fetal Kidney	kidney
28	chr9:13153800-13167800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:13154800-13167000	Weak transcription	Colon Smooth Muscle	Colon
30	chr9:13156800-13201400	Weak transcription	Psoas Muscle	Psoas
31	chr9:13157400-13175400	Weak transcription	Placenta	Placenta
32	chr9:13157600-13167800	Weak transcription	Osteobl	bone
33	chr9:13157800-13167400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:13158000-13167800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:13158200-13173200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:13158400-13167800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:13158600-13167200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:13158800-13188800	Weak transcription	Fetal Heart	heart
39	chr9:13160200-13167000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:13160600-13167600	Weak transcription	HSMM	muscle
41	chr9:13160600-13183000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr9:13161200-13166600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:13161200-13167600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr9:13161200-13167800	Weak transcription	Brain Anterior Caudate	brain
45	chr9:13161400-13167600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:13161600-13170800	Weak transcription	Fetal Intestine Small	intestine
47	chr9:13161600-13188200	Weak transcription	Fetal Stomach	stomach
48	chr9:13161800-13170800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:13162000-13167800	Weak transcription	HUVEC	blood vessel
50	chr9:13162200-13167800	Weak transcription	Aorta	Aorta

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